Add Building information and building for sources on GPU

README.org

@@ -26,3 +26,69 @@ before the proper paper is released please contact me.
 
 In the mean time the code has been used in
 [[https://aip.scitation.org/doi/10.1063/5.0074936][this publication]] and can therefore been cited.
+
+* Building
+
+Atrip uses autotools to build the system.
+Autotools works by first creating a =configure= script from
+a =configure.ac= file.
+
+Atrip should be built out of source, this means that
+you have to create a build directory other that the root
+directory, for instance in the =build/tutorial= directory
+
+#+begin_src sh :exports code 
+mkdir -p build/tutorial/
+cd build/tutorial
+#+end_src
+
+First you have to build the =configure= script by doing
+
+#+begin_src sh :dir build/tutorial :exports code :results raw drawer
+../../bootstrap.sh
+#+end_src
+
+#+RESULTS:
+:results:
+
+  Creating configure script
+
+
+  Now you can build by doing
+
+  mkdir build
+  cd build
+  ../configure
+  make extern
+  make all
+
+:end:
+
+And then you can see the =configure= options
+#+begin_src sh :dir build/tutorial :results raw drawer :eval no 
+../../configure --help
+#+end_src
+
+** Benchmarks
+
+The script =tools/configure-benches.sh= can be used to create
+a couple of configurations for benchmarks:
+
+#+begin_src sh :exports results :results verbatim org   :results verbatim drawer replace output 
+awk '/begin +doc/,/end +doc/ { print $NL }' tools/configure-benches.sh |
+grep -v -e "begin \+doc" -e "end \+doc" |
+sed "s/^# //; s/^# *$//; /^$/d"
+#+end_src
+
+#+RESULTS:
+:results:
+- default ::
+  This configuration uses a CPU code with dgemm
+  and without computing slices.
+- only-dgemm ::
+  This only runs the computation part that involves dgemms.
+- slices-on-gpu-only-dgemm ::
+  This configuration tests that slices reside completely on the gpu
+  and it should use a CUDA aware MPI implementation.
+  It also only uses the routines that involve dgemm.
+:end:

tools/configure-benches.sh

@@ -6,6 +6,7 @@ set -eu
 flags=("${@}")
 PROJECTS=()
 
+############################################################
 #
 ## Check root directory
 #
@@ -35,6 +36,7 @@ EOF
     exit 1
 }
 
+############################################################
 #
 ## Create configuration function
 #
@@ -48,7 +50,8 @@ create_config () {
     echo "> creating: $name"
     cat <<SH > configure
 #!/usr/bin/env bash
-# created by $0 on $(date)
+# creator: $0
+# date: $(date)
 
 $root_project/configure $(cat $file | paste -s) \\
 $(for word in "${flags[@]}"; do
@@ -62,9 +65,14 @@ SH
     cd - > /dev/null
 }
 
+############################################################
+# begin doc
 #
-## default configuration
+# - default ::
+#   This configuration uses a CPU code with dgemm
+#   and without computing slices.
 #
+# end doc
 
 tmp=`mktemp`
 cat <<EOF > $tmp
@@ -74,9 +82,12 @@ EOF
 create_config $tmp default
 rm $tmp
 
+# begin doc
 #
-## only-dgemm configuration
+# - only-dgemm ::
+#   This only runs the computation part that involves dgemms.
 #
+# end doc
 
 tmp=`mktemp`
 cat <<EOF > $tmp
@@ -87,6 +98,29 @@ EOF
 create_config $tmp only-dgemm
 rm $tmp
 
+#
+# begin doc
+#
+# - slices-on-gpu-only-dgemm ::
+#   This configuration tests that slices reside completely on the gpu
+#   and it should use a CUDA aware MPI implementation.
+#   It also only uses the routines that involve dgemm.
+#
+# end doc
+
+tmp=`mktemp`
+cat <<EOF > $tmp
+--enable-cuda
+--enable-sources-in-gpu
+--enable-cuda-aware-mpi
+--enable-only-dgemm
+--disable-slice
+EOF
+
+create_config $tmp sources-in-gpu
+rm $tmp
+
+############################################################
 #
 ## Create makefile
 #
@@ -128,5 +162,5 @@ EOF
 ## Emacs stuff
 # Local Variables:
 # eval: (outline-minor-mode)
-# outline-regexp: "## "
+# outline-regexp: "############################################################"
 # End: