Now compiling

.gitignore

@@ -1,7 +1,13 @@
+etc/autotools/
+Makefile.in
+build
 .emacs
 *.rst
 doxygen
 sphinx
+aclocal.m4
+autom4te.cache/
+configure
 
 include/dbg.h
 doc/doxygen/

Makefile

@@ -1,113 +0,0 @@
-include atrip.mk
-CONFIG ?= gcc
-PREFIX ?= /usr
-SOURCES_FILE := Sources.mk
-
--include config.mk
-include $(SOURCES_FILE)
-include ./etc/make/emacs.mk
-include ./etc/config/$(CONFIG).mk
-include ./bench/config.mk
-
-$(info ==ATRIP== using configuration CONFIG=$(CONFIG))
-
-ORG_MAIN = atrip.org
-OBJ_FILES = $(patsubst %.cxx,%.o,$(filter-out %.hpp,$(ATRIP_SOURCES)))
-DEP_FILES = $(patsubst %.o,%.d,$(OBJ_FILES))
-ATRIP_SHARED_LIBRARY = lib/$(CONFIG)/libatrip.so
-ATRIP_STATIC_LIBRARY = lib/$(CONFIG)/libatrip.a
-
-
-extern: $(EXTERNAL_DEPENDENCIES)
-clean-extern: CLEANING=yes
-clean-extern:
-	rm -vrf extern
-#$(DEP_FILES): extern
-.PHONY: extern
-
-lib: extern
-lib: $(DEP_FILES)
-lib: $(ATRIP_SHARED_LIBRARY) $(ATRIP_STATIC_LIBRARY)
-static: $(ATRIP_STATIC_LIBRARY)
-shared: $(ATRIP_SHARED_LIBRARY)
-.PHONY: lib static shared
-
-ifeq ($(MAKECMD),lib)
-include $(DEP_FILES)
-endif
-
-
-
-$(ATRIP_SHARED_LIBRARY): $(OBJ_FILES)
-	mkdir -p $(@D)
-	$(CXX) -shared $< $(CXXFLAGS) $(LDFLAGS) -o $@
-
-$(ATRIP_STATIC_LIBRARY): $(OBJ_FILES)
-	mkdir -p $(@D)
-	$(AR) rcs $@ $<
-
-$(SOURCES_FILE): config.el
-	echo -n "ATRIP_SOURCES = " > $@
-	$(EMACS) -f atrip-print-sources >> $@
-
-print:
-	$(info $(filter-out %.hpp,$(ATRIP_SOURCES)))
-
-$(ATRIP_SOURCES): $(ORG_MAIN)
-	$(call tangle,$<)
-
-tangle: $(ATRIP_SOURCES)
-
-clean-emacs: CLEANING=yes
-clean-emacs:
-	-rm -v $(ATRIP_SOURCES)
-
-clean: CLEANING=yes
-clean:
-	-rm -v \
-		$(OBJ_FILES) \
-		$(DEP_FILES) \
-		$(ATRIP_SHARED_LIBRARY) \
-		$(ATRIP_STATIC_LIBRARY)
-
-clean-all: CLEANING=yes
-clean-all: bench-clean clean-emacs clean clean-extern
-
-bench: $(BENCH_TARGETS)
-$(BENCH_TARGETS): $(ATRIP_STATIC_LIBRARY)
-
-.PHONY: clean tangle bench
-
-%: %.o
-	$(info [bin] $@)
-	$(CXX) $< $(CXXFLAGS) $(LDFLAGS) -o $@
-
-%.o: %.cxx
-	$(info [obj] $@)
-	$(CXX) -c $< $(CXXFLAGS) -o $@
-
-%.d: %.cxx
-	$(info [dep] $@)
-	$(CXX) -M $< $(CXXFLAGS) -o $@
-
-.PHONY: install
-install:
-	mkdir -p $(PREFIX)/include
-	cp -r include/* $(PREFIX)/include/
-	mkdir -p $(PREFIX)/lib
-	cp $(wildcard $(ATRIP_SHARED_LIBRARY) $(ATRIP_STATIC_LIBRARY)) $(PREFIX)/lib/
-
-.PHONY: html
-EMACS_HTML = $(EMACS) --load ./etc/emacs/html.el
-HTML_MAIN = $(patsubst %.org,%.html,$(ORG_MAIN))
-html: $(HTML_MAIN)
-%.html: %.org
-	$(EMACS_HTML) $< -f org-html-export-to-html
-
-%.rst: %.org
-	$(EMACS_HTML) $< -f org-rst-export-to-rst
-
-.PHONY: dbg
-dbg: include/dbg.h
-include/dbg.h:
-	wget -O $@ "https://raw.githubusercontent.com/sharkdp/dbg-macro/master/dbg.h"

Makefile.am

@@ -0,0 +1,32 @@
+include ./etc/make/emacs.mk
+
+SUBDIRS = src bench
+
+_ATRIPSRCS = Sources.mk
+## include $(_ATRIPSRCS)
+
+ORG_MAIN = atrip.org
+ATRIP_SHARED_LIBRARY = lib/$(CONFIG)/libatrip.so
+ATRIP_STATIC_LIBRARY = lib/$(CONFIG)/libatrip.a
+
+tangle: $(ORG_MAIN)
+	$(call tangle,$<)
+
+clean-emacs: CLEANING=yes
+clean-emacs:
+	-rm -v $(_ATRIPSRCS)
+
+.PHONY: tangle
+
+EMACS_HTML = $(EMACS) --load ./etc/emacs/html.el
+
+%.html: %.org
+	$(EMACS_HTML) $< -f org-html-export-to-html
+
+%.rst: %.org
+	$(EMACS_HTML) $< -f org-rst-export-to-rst
+
+.PHONY: dbg
+dbg: include/dbg.h
+include/dbg.h:
+	wget -O $@ "https://raw.githubusercontent.com/sharkdp/dbg-macro/master/dbg.h"

Sources.mk

@@ -1 +1 @@
-ATRIP_SOURCES = include/atrip.hpp src/atrip/Atrip.cxx include/atrip/Atrip.hpp include/atrip/Debug.hpp include/atrip/Equations.hpp include/atrip/Tuples.hpp include/atrip/Unions.hpp include/atrip/RankMap.hpp include/atrip/Blas.hpp include/atrip/Utils.hpp include/atrip/SliceUnion.hpp include/atrip/Slice.hpp
+_ATRIPSRCS = include/atrip.hpp src/atrip/Atrip.cxx include/atrip/Atrip.hpp include/atrip/Debug.hpp include/atrip/Equations.hpp include/atrip/Tuples.hpp include/atrip/Unions.hpp include/atrip/RankMap.hpp include/atrip/Blas.hpp include/atrip/Utils.hpp include/atrip/SliceUnion.hpp include/atrip/Slice.hpp

atrip.org

@@ -1645,6 +1645,7 @@ getNodeInfos(std::vector<string> const& nodeNames) {
                       nodeId,
                       globalRank++,
                       localRanks[nodeId]++,
+                      (size_t)
                       std::count(nodeNames.begin(),
                                  nodeNames.end(),
                                  name)
@@ -3117,7 +3118,6 @@ Atrip::Output Atrip::run(Atrip::Input<F> const& in) {
 
 
   using Database = typename Slice<F>::Database;
-  using LocalDatabase = typename Slice<F>::LocalDatabase;
   auto communicateDatabase
     = [ &unions
       , np

bench/Makefile.am

@@ -1,4 +1,5 @@
 AM_LDFLAGS = -fopenmp
+AM_CPPFLAGS = -I$(top_srcdir)/include/
 
 bin_PROGRAMS = test_main
 test_main_SOURCES = test_main.cxx
@@ -7,6 +8,5 @@ test_main_LDADD = \
 -lopenblas        \
 -lscalapack       \
 @LIBCTF_LD_LIBRARY_PATH@/libctf.a \
-@abs_top_builddir@/src/libatrip.a
+$(top_builddir)/src/libatrip.a
 
-#LDFLAGS += @ATRIP_LDFLAGS@

bench/test_main.cxx

@@ -7,7 +7,7 @@
 #include <iostream>
 #include <atrip.hpp>
 #include <atrip/Debug.hpp>
-#include <bench/CLI11.hpp>
+#include <CLI11.hpp>
 
 #define _print_size(what, size)                 \
   if (rank == 0) {                              \

configure.ac

@@ -9,30 +9,32 @@ AC_CONFIG_SRCDIR([.])
 AC_PREREQ(2.69)
 AC_LANG([C++])
 AC_CONFIG_MACRO_DIR([./etc/m4])
-AM_INIT_AUTOMAKE([foreign])
+AC_CONFIG_AUX_DIR([./etc/autotools])
+AM_INIT_AUTOMAKE([foreign -Wall])
 
 
 dnl -----------------------------------------------------------------------
 dnl Configure switches
 
 AC_ARG_ENABLE(shared,
-  AS_HELP_STRING( [--enable-shared],
+              AS_HELP_STRING([--enable-shared],
-                  [enable loading compiled files (default=YES)]),
+                             [enable loading compiled
+                                     files (default=YES)]),
               [], [enable_shared=yes])
 
 dnl LIBGC library options
 AC_ARG_WITH(libctf-prefix,
-  AS_HELP_STRING( [--with-libctf-prefix=path],
+            AS_HELP_STRING([--with-libctf-prefix=path],
-                  [prefix for system LIBGC includes and libraries] ),
+                           [prefix for CTF includes and libraries] ),
-  [LIBCTF_CPATH="$withval/include";
+            [LIBCTF_CPATH="`readlink -f $withval`/include";
-   LIBCTF_LD_LIBRARY_PATH="$withval/lib";
+                           LIBCTF_LD_LIBRARY_PATH="`readlink -f $withval`/lib";
                            BUILD_CTF=NO],
             [BUILD_CTF=YES])
 
 AC_ARG_WITH(dgemm,
-  AS_HELP_STRING( [--without-dgemm],
+            AS_HELP_STRING([--without-dgemm], [Disable dgemm]),
-                  [Disable dgemm]),
+            [with_dgemm=NO],
-  [with_dgemm=NO], [with_dgemm=YES])
+            [with_dgemm=YES])
 
 
 
@@ -52,6 +54,7 @@ AC_CANONICAL_BUILD
 AC_CANONICAL_HOST
 
 AC_PROG_CXX           dnl sets variable CXX
+AM_PROG_AR
 AC_PROG_CPP           dnl sets variable CPP
 AC_PROG_RANLIB        dnl sets variable RANLIB
 AC_PROG_INSTALL       dnl sets variables INSTALL, INSTALL_DATA, INSTALL_PROGRAM
@@ -64,21 +67,31 @@ AC_TYPE_SIZE_T
 AC_FUNC_MALLOC
 
 AX_CXX_COMPILE_STDCXX([11])
-
+AX_CXX_STATIC_CAST
+AX_CXX_TEMPLATES
+AX_CXX_TYPENAME
 AX_MPI([],
        [AC_MSG_ERROR([You don not have an MPI Implementation!])])
+AX_PROG_CXX_MPI
 CXX=${MPICXX}
 
-CXXFLAGS="$CXXFLAGS -I$PWD/include"
+dnl ---------- CHECK CTF
-CXXFLAGS="$CXXFLAGS -I${LIBCTF_CPATH}"
+if test xYES = x${BUILD_CTF}; then
-LDFLAGS="$LDFLAGS -L${LIBCTF_LD_LIBRARY_PATH} -lctf"
+  AC_MSG_ERROR([Sorry, building CTF not supported yet provide a build path
+                      with --with-libctf-prefix=path])
+else
+  CPPFLAGS="$CPPFLAGS -I${LIBCTF_CPATH}"
+  LDFLAGS="$LDFLAGS -L${LIBCTF_LD_LIBRARY_PATH} -lctf"
+  AC_CHECK_HEADER([ctf.hpp],
+                  [],
+                  [AC_MSG_ERROR([no ctf.hpp])])
+fi
 
-AC_CONFIG_FILES([
+
+AC_CONFIG_FILES([Makefile
                  src/Makefile
                  bench/Makefile
-  etc/config/auto.mk
                  ])
-
 AC_CONFIG_HEADERS([config.h])
 
 AC_MSG_RESULT([
@@ -86,11 +99,8 @@ AC_MSG_RESULT([
                        -----------------------
                        CXX      = $CXX
                        CXXFLAGS = $CXXFLAGS
-                       DEFAULT_INCLUDES = $DEFAULT_INCLUDES
                        LDFLAGS  = $LDFLAGS
                        ATRIP_LDFLAGS  = $ATRIP_LDFLAGS
-                       bindir   = $bindir
-                       libdir   = $libdir
 ])
 
 AC_OUTPUT

include/atrip/Tuples.hpp

@@ -125,6 +125,7 @@ getNodeInfos(std::vector<string> const& nodeNames) {
                       nodeId,
                       globalRank++,
                       localRanks[nodeId]++,
+                      (size_t)
                       std::count(nodeNames.begin(),
                                  nodeNames.end(),
                                  name)

src/Makefile.am

@@ -1,2 +1,8 @@
+AUTOMAKE_OPTIONS = subdir-objects
+
+AM_CXXFLAGS = -Wall --pedantic
+
 lib_LIBRARIES = libatrip.a
-libatrip_a_SOURCES = atrip/Atrip.cxx
+
+libatrip_a_CPPFLAGS = -I$(top_srcdir)/include/
+libatrip_a_SOURCES = ./atrip/Atrip.cxx

src/atrip/Atrip.cxx

@@ -157,7 +157,6 @@ Atrip::Output Atrip::run(Atrip::Input<F> const& in) {
 
 
   using Database = typename Slice<F>::Database;
-  using LocalDatabase = typename Slice<F>::LocalDatabase;
   auto communicateDatabase
     = [ &unions
       , np